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• Spherical coordinates of 3D structure of gene
  Does anyone have any code to get the spherical coordinates of the 3D structure of gene(3D structu...
• 3D to voxel
  How do i generate a voxel matrix from a 3D structure of a gene present in .pdb format?
• How To Confirm The Presence Of 3D Structure Of A Small Molecule?
  how to confirm the presence of a 3d structure of a small molecule? is there any database to confi...
• Finding A Suitable Template For Homology Modeling
  Hi I have a sequence for which I could not find a suitable template to model. Is there any other...
• How do I compare RNA structures?
  I have ~700 RNA structures that were generated using Unifold. I can visually go through and say "...
• Gene 3D Data download
  How do i download the 3D structures of genes from ncbi given the gene name ex: MAPK3
• Equirectangular projection of 3D structure of gene
  Does anyone have any code to basically get the equirectangular projection of the 3 D structure of...
• Protein 3D structure, Leucine Zipper
  Hi I want to incorporate Leucine zipper like properties in a protein 3D structure between 2 Heli...
• The question about the boundary of circular RNA
  I do some circular RNA researches recently. I have some questions about the boundary of Circular ...
• converting de-novo mutated protein structure to PDB/3D file-format/structure
  I have a mutated protein sequence. How can I convert my de-novo mutated protein structure to PDB/...
• Predicting binding probability of circRNA and miRNA
  Dear all, I am working on circular RNA and miRNA. I used the tool DCC to get possible circular RN...
• Well characterized circular RNA structure
  Are there any well-characterized secondary structures out there of circular RNA? know there are m...
• how to annotate Circular RNA gene type?
  Hi, I detected Circular RNA through RNA-seq via CIRI2 as a Circular RNA identifier tool. E.g., ...
• predicting 3D structure of protein from DNA sequence
  I have a sequence of DNA and would like to get the 3D structure of the protein which the result o...
• What Is The Status-Quo In Secondary Structure Prediction ?
  Hi there, i heard from a friend of mine, that 3d structure prediction is not accurate enough to ...
• 3D structures of compounds
  Is there a a database to search 3D structure of chemicals/ small molecules that can be drugs or i...
• how to generate a three dimensional structure of protein ?
  which is better pairwise sequence alignment or multiple sequence alignment to generate 3 d of pro...
• how to calculate or extract Circular RNA expression via RNA-seq data
  Hi, Through RNA-seq data set, I extract Circular RNA.Now, I want to know the expression level of...
• How to calculate essentiality score for circular RNA
  Hi, I am trying to find a way to calculate the essentiality score for circular RNA. What method ...
• How To Extract Conserved Regions From A Large Number Of Sequences
  I have 1061 sequences , I want to extract the conserved regions, Most of the servers accept onl...
• How Do You Start Writing An Algorithm? Help Needed!
  Hi, I am a student currently doing a project about protein structure comparison and I am suppose...