How to extract SNPs of Illumina Omniexpress from Denisovan data?

Question

[kmrchllpn]

I am looking for a script which can extract the Illumina Omniexpress genotype data from the high quality denisovan genome vcf file. http://cdna.eva.mpg.de/denisova/VCF/.

Thanks

Answer 1

[erictleung]

Here is a very similar post to your question: Extracting Genotype Information From Vcf

Also, here's a list of various tools you can use to parse through VCF files to help get the information you need: https://kromozome.wordpress.com/2014/09/09/vcftools/

I hope this helps.