Whole Blood Samples of Cancer Patients from TCGA?

Question

[dog.seal6363]

Hi,

I was wondering if anyone knows how I could obtain the SNP data from whole blood samples of cancer patients from TCGA. I tried using the Biospecimen Metadata Browser, but I had no results.

Thank you for answering my question.

Answer 1

[CY]

If you want mutation data of patients from TCGA, you can go to https://tcga-data.nci.nih.gov/tcga/ or their FTP site for downloading. However, that is mutation mutation data. The SNP you refered is germline mutation and ,as far as I know, there is no germline mutation data for TCGA patient. Please correct me if I am wrong.

[Shicheng Guo]

Hi CY. Do you know how to download all the mutation information for 10202 TCGA samples. I only know how to download it for individual gene.