Question: Existing Tools For Viewing A De Bruijn Graph From Raw Reads
gravatar for kshitijtayal
5.0 years ago by
kshitijtayal40 wrote:

I understand that there are plethora of tools available where you enter the read file and the software will internally build the De bruijn graph and will display the assembled genome.

I want to actually see the debruijn graph that has been constructed from the read file. Is there any tool available where you can actually view the graph from the raw-reads.

next-gen assembly genome • 1.4k views
ADD COMMENTlink modified 5.0 years ago by h.mon31k • written 5.0 years ago by kshitijtayal40
gravatar for h.mon
5.0 years ago by
h.mon31k wrote:

Have a look at Bandage.

ADD COMMENTlink written 5.0 years ago by h.mon31k

Thank you for introducing me to this great tool. It would be of great help. However i have a doubt of mine that i would like to clarify . Bandage only supports loading assembled graph only. If i have a read file and want to view De briujn graph directly, it is impossible using Bandage. For bandage you should have a assembled graph. Correct me if i am wrong.

ADD REPLYlink written 5.0 years ago by kshitijtayal40
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