Question: Existing Tools For Viewing A De Bruijn Graph From Raw Reads
1
gravatar for kshitijtayal
4.2 years ago by
kshitijtayal40
India
kshitijtayal40 wrote:

I understand that there are plethora of tools available where you enter the read file and the software will internally build the De bruijn graph and will display the assembled genome.

I want to actually see the debruijn graph that has been constructed from the read file. Is there any tool available where you can actually view the graph from the raw-reads.

next-gen assembly genome • 1.2k views
ADD COMMENTlink modified 4.1 years ago by h.mon28k • written 4.2 years ago by kshitijtayal40
2
gravatar for h.mon
4.1 years ago by
h.mon28k
Brazil
h.mon28k wrote:

Have a look at Bandage.
 

ADD COMMENTlink written 4.1 years ago by h.mon28k

Thank you for introducing me to this great tool. It would be of great help. However i have a doubt of mine that i would like to clarify . Bandage only supports loading assembled graph only. If i have a read file and want to view De briujn graph directly, it is impossible using Bandage. For bandage you should have a assembled graph. Correct me if i am wrong.

ADD REPLYlink written 4.1 years ago by kshitijtayal40
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