Has anyone successfully parallelized BWA alignment on multiple CPUs? Do the reads contained in a fastq file depend upon one another, or can one break the fastq file up, align the pieces using multiple CPUs, and then reassemble the resulting sam files? My suspicion is the answer is no, but I don't know and have not found anything in the BWA documentation. Does anyone have any experience with (parallel BWA)? Thanks.
Question: Parallelizing Bwa On Multiple Cpus
7.5 years ago by
Alex Paciorkowski ♦ 3.3k
Rochester, NY USA
Alex Paciorkowski ♦ 3.3k wrote:
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