Help me choosing a tool to analyze protein-protein interaction
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7.0 years ago
hbitrifle ▴ 10

Hello,

I'm very new on proteomic analysis. Right now we have a list of proteins (over 4 thousand) and we want to analyze the interactions among them. Is there a database or software we can use to get the network by simply pasting the list of protein names?

Thanks in advance for all your help!

proteomics • 1.5k views
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You mean a tool to analyze or a tool to visualize?

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7.0 years ago
vassialk ▴ 200

Cytoscape with plugins

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7.0 years ago
joram • 0

From Databases:

  • GeneMania
  • BioGrid
  • Intact

Software to visualize and visualize:

  • Gephi

Programaticaly:

  • Networkx in python, igraph in R...
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