I got HBV amplicon reads from a patient, and want to reconstruct HBV quasispecies using a reference and the amplicon reads. When I aligned them to a given reference(3320 bp long) I noticed that the reads are not covering the entire reference. the tool I am using can't handle gaps. In such case , what people do?
Question: Reference Covering Issue Using Amplicon Reads
7.5 years ago by
Sam • 10
Sam • 10 wrote:
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