Question: Retrieve coordinates as a Granges object from a custom track of UCSC genome browser using rtracklayer
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gravatar for Dimitris Polychronopoulos
4.2 years ago by
United Kingdom/London/Imperial College London

Dear all,

 

I would like to retrieve coordinates (as a BED file) from a custom track of UCSC genome browser. Is there any way of doing that through rtracklayer (or any other package) in R? I would prefer to have it as a Granges object. Is there any import function where I could put directly the URL?

Dimitris

R granges myposts rtracklayer • 1.6k views
ADD COMMENTlink written 4.2 years ago by Dimitris Polychronopoulos0
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