Tool: Digital Expression Explorer
gravatar for mark.ziemann
3.3 years ago by
mark.ziemann1.1k wrote:

I'm glad to publicly release Digital Expression Explorer (DEE) which is a database and searchable web interface of processed RNA-seq data. You can search with GEO series numbers and download the count matrix in a matter of seconds ( try the demo video). The count matrices can be analysed using online statistical tools like Degust. There is an R function to access the data programmatically, and bulk data downloads are also available. We hope the tool will foster greater re-use of these valuable datasets. I’m happy to field any questions or comments you might have.

Further reading at my blog.


2017 Edit: The DEE site has been taken down by Baker institute but bulk data are still available via google drive here We are actively working on DEE version 2 as detailed on my blog

2018 Edit: DEE2 beta is now operational. Try it and let us know your suggestions and feedback.

rna-seq tool geo • 1.6k views
ADD COMMENTlink modified 8 weeks ago • written 3.3 years ago by mark.ziemann1.1k

Looks good. Am exploring it right now.

ADD REPLYlink written 3.3 years ago by Sandeep250
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1303 users visited in the last hour