Tool: Digital Expression Explorer
gravatar for mark.ziemann
3.8 years ago by
mark.ziemann1.2k wrote:

I'm glad to publicly release Digital Expression Explorer (DEE) which is a database and searchable web interface of processed RNA-seq data. You can search with GEO series numbers and download the count matrix in a matter of seconds ( try the demo video). The count matrices can be analysed using online statistical tools like Degust. There is an R function to access the data programmatically, and bulk data downloads are also available. We hope the tool will foster greater re-use of these valuable datasets. I’m happy to field any questions or comments you might have.

Further reading at my blog.


2017 Edit: The DEE site has been taken down by Baker institute but bulk data are still available via google drive here We are actively working on DEE version 2 as detailed on my blog

2018 Edit: DEE2 beta is now operational. Try it and let us know your suggestions and feedback.

rna-seq tool geo • 1.9k views
ADD COMMENTlink modified 8 months ago • written 3.8 years ago by mark.ziemann1.2k

Looks good. Am exploring it right now.

ADD REPLYlink written 3.8 years ago by Sandeep250
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