Question: question about CBioprtal
1
gravatar for kanwarjag
4.0 years ago by
kanwarjag1000
United States
kanwarjag1000 wrote:

I am trying to use CBioportal to find out the mRNA expression between normal vs tumor cases of one gene but could not find any instructions how I can do that. When I use this database I only see option for

Mutation and CNA --Only Mutation ---Only CNA (http://www.cbioportal.org/index.do) when is use the following command in web page 

gene: EXP>2 it will allow me selection of normal samples. Could some one at forum may help to understand how shoudl I solve this issue.

Thanks

 

cbioportal mrna expresion • 1.2k views
ADD COMMENTlink modified 3.9 years ago by JJ Gao50 • written 4.0 years ago by kanwarjag1000
2
gravatar for JJ Gao
3.9 years ago by
JJ Gao50
United States/New York/MSKCC
JJ Gao50 wrote:

When querying 2 or more studies, cBioPortal only support mutaiton and CNA. After selecting one cancer study, you would see expression profile if available for the selected study. However, most of the expression z-score profiles are calculated based on a reference population of tumor samples. Normal data integration is in the roadmap of cBioProtal and will be available in the near future.

ADD COMMENTlink written 3.9 years ago by JJ Gao50
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