question about CBioprtal
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6.0 years ago
kanwarjag ★ 1.1k

I am trying to use CBioportal to find out the mRNA expression between normal vs tumor cases of one gene but could not find any instructions how I can do that. When I use this database I only see option for

Mutation and CNA --Only Mutation ---Only CNA (http://www.cbioportal.org/index.do) when is use the following command in web page 

gene: EXP>2 it will allow me selection of normal samples. Could some one at forum may help to understand how shoudl I solve this issue.

Thanks

 

CBioportal mRNA expresion • 1.6k views
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Entering edit mode
6.0 years ago
JJ Gao ▴ 50

When querying 2 or more studies, cBioPortal only support mutaiton and CNA. After selecting one cancer study, you would see expression profile if available for the selected study. However, most of the expression z-score profiles are calculated based on a reference population of tumor samples. Normal data integration is in the roadmap of cBioProtal and will be available in the near future.

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