Using BioPython to get sequences
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7.0 years ago
jolespin ▴ 140

Is there a way to extract all the isoform sequences for a gene using BioPython. For example, if you had the HUGO ID, could you give it the HUGO ID and get back a list of sequences or the canonical sequence? I'm new to BioPython and the documentation was hard for me to sift through when looking for this problem. Do I have to do Bio.Entrez or is there another way? Can I do this without the search term from http://stackoverflow.com/questions/13557981/getting-a-gene-sequence-from-entrez-using-biopython

gene python biopython sequence • 2.9k views
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