Question: filter multiple VCF files using snpSift
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jan • 130 wrote:
Hi,
I have several hundreds annonated VCF files (annotated using snpEff). I want to filter out all the low quality and low impact variants in all VCF files. Is there a way to filter all files at one time, rather than filtering each file one by one ? I'm planning to use snpSift to filter out the low quality variants..
why is the 2nd option a problem?
I wasn't clear in my question. I wanted to ask how to automatically search a gene in all of my files without having to manually do the same thing for all files. I could just do a loop.