Question: (Closed) Sample script for parsing pubmed data
0
gravatar for mosiep
5.0 years ago by
mosiep0
India
mosiep0 wrote:

Hi all,

im quite new to annotations

i would appreciate some help from you guys ,

i would like to parse some data off some files i have downloaded from pubmed could you help me with a sample xml perl script to parse the data with.?? , they are in the form of file headers how do i parse them with perl and xml, asking this as im totally new to scripting

gene annotations gene • 1.7k views
ADD COMMENTlink modified 5.0 years ago • written 5.0 years ago by mosiep0

Hello mosiep!

We believe that this post does not fit the main topic of this site.

not related to bioinformatics. See stackoverflow: e.g http://stackoverflow.com/questions/9651296

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink written 5.0 years ago by Pierre Lindenbaum131k
Hi Pierre, I'm trying to work on annotation data for the first time, I'm new to scripting and I have few medgen data how do I go about parsing the data
ADD REPLYlink written 5.0 years ago by mosiep0
I tried reading through the ncbi handbook and your answrs as well for similar queries but I wasn't able to get a proper answer from that
ADD REPLYlink written 5.0 years ago by mosiep0
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