Question: To Calculate The Energy From Secondary Structure Dot Bracket Notation Of Rna
3
gravatar for Angel
7.0 years ago by
Angel90
Angel90 wrote:

Hi Biostar!

I have the secondary structure of RNA in dot bracket notation. so, now with the same dot bracket notation i need to calculate the energy. Could anyone suggest me a tool or server or an algorithm to calculate the free energy from dot bracket notation of RNA?

Thanks in advance

rna secondary • 2.0k views
ADD COMMENTlink written 7.0 years ago by Angel90
2
gravatar for Alastair Kerr
7.0 years ago by
Alastair Kerr5.2k
The University of Edinburgh, UK
Alastair Kerr5.2k wrote:

RNAeval from the Vienna Tools Package will do this for you.

ADD COMMENTlink written 7.0 years ago by Alastair Kerr5.2k

but i think the server doesn't work.

ADD REPLYlink written 7.0 years ago by Angel90

Looks like the site was getting a revamp as version 2 is now out. (Site is working as of 22/1/12)

ADD REPLYlink written 7.0 years ago by Alastair Kerr5.2k
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