Hi Everyone So i am actually working on Rna-seq data and i am interested in 80 Ribosomal protein genes. I am using this package called Trinity. Now this package has some command lines to run which includes some perl scripts. Since i am working on files with single end read, i would like to know that after i finish my trinity package how could i extract my 80 ribosomal protein genes of interest from that de novo built transcriptome.
It seems from the documentation that transcripts you get from trinity are very much self explanatory but have no gene names(or transcript names) and so how can i identify what are my transcripts of interest(in this case my 80 ribosomal proteins)
Any help would be appreciated
Thank You In advance