Question: HOWTO get alternative splicing event for a specific gene
0
gravatar for Assa Yeroslaviz
4.0 years ago by
Assa Yeroslaviz1.2k
Munich
Assa Yeroslaviz1.2k wrote:

Hi,

 

I would like to know how i can get the alternative splicing events for a specific gene (mouse/human) from the UCSC browser (e.g. Pax9 in the mouse.)?

Is there a database, where I can find alternative splcing events?

thanks,

Assa

ADD COMMENTlink modified 4.0 years ago by genomax74k • written 4.0 years ago by Assa Yeroslaviz1.2k
1
gravatar for genomax
4.0 years ago by
genomax74k
United States
genomax74k wrote:

One way would be to use Table browser at UCSC.

Tools --> Table Browser --> Choose Mouse genome --> Correct build --> group "mRNA and EST" --> track "spliced EST" --> Position "Pax9" hit lookup and then select the gene from the new page that opens up, the coordinates will be populated in the position window --> Select an output format --> Get output.

This could be done for multiple regions but may become tedious.

I am sure there is a table somewhere you can get this from. If I don't get to it first I am sure someone else on this forum will.

ADD COMMENTlink written 4.0 years ago by genomax74k

thanks, that sounds promising. I will try and see how it fit my questions/needs.

ADD REPLYlink written 4.0 years ago by Assa Yeroslaviz1.2k
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