Question: which is the model i should use for GS using SNP effects
gravatar for Jaime Zapata
3.1 years ago by
Jaime Zapata0 wrote:

Hello everyone

I have a dataset of 300 eucalypts trees and 12K of bilallelic SNP where the Manhattan plot shows heterogeneous distribution for the marker effects. I fitted a BLUP model using GS3 program and r with phenotypes was higher than fitting a Bayesian model. How can I decide which model is the aproppiate? thanks for any help.

ADD COMMENTlink modified 9 months ago by Kevin Blighe33k • written 3.1 years ago by Jaime Zapata0
gravatar for Kevin Blighe
9 months ago by
Kevin Blighe33k
Republic of Ireland
Kevin Blighe33k wrote:

Perform >3x cross validation on the models and check the CV error. The one with the smallest error is possibly the better model.

ADD COMMENTlink written 9 months ago by Kevin Blighe33k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1610 users visited in the last hour