Question: which is the model i should use for GS using SNP effects
0
gravatar for Jaime Zapata
2.9 years ago by
Chile
Jaime Zapata0 wrote:

Hello everyone

I have a dataset of 300 eucalypts trees and 12K of bilallelic SNP where the Manhattan plot shows heterogeneous distribution for the marker effects. I fitted a BLUP model using GS3 program and r with phenotypes was higher than fitting a Bayesian model. How can I decide which model is the aproppiate? thanks for any help.

ADD COMMENTlink modified 6 months ago by Kevin Blighe28k • written 2.9 years ago by Jaime Zapata0
1
gravatar for Kevin Blighe
6 months ago by
Kevin Blighe28k
USA / Europe / Brazil
Kevin Blighe28k wrote:

Perform >3x cross validation on the models and check the CV error. The one with the smallest error is possibly the better model.

ADD COMMENTlink written 6 months ago by Kevin Blighe28k
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