all vs all blast result manipulation

Question

[Eva_Maria]

I have result of all vs all blast result of different genome in same species. how to identify orthologous groups form this out put?

Answer 1

[Andrzej Zielezinski]

You can use one of the following programs:

1. InParanoid
2. OrthoMCL
3. RSD

They find orthologs between all the sequences in the query and subject genomes using BLAST results that have already been computed.