Question: clustalw2 output format
0
gravatar for prostoesh
5.1 years ago by
prostoesh10
Russian Federation
prostoesh10 wrote:

Hey, i'm using clustalw to allign protein sequences and i'm having an output like this:

 

CLUSTAL 2.1 multiple sequence alignment


KIL98380.1                          ----------------------------------------------MNKN
gi|495892927|ref|WP_008617506.      ----------------------------------------------MNKN
gi|83311888|ref|YP_422152.1|        

KIL98380.1                          DLVTAVAGAAGLSKADAAKAVDGVFEAITSALKGGDEVRLVGFGTFAVAS
gi|495892927|ref|WP_008617506.      DLVTAVAGAAGLSKADAAKAVDGVFEAITSALKGGDEVRLVGFGTFAVAS
gi|83311888|ref|YP_422152.1|        DLVTAVAGAAGLSKADAAKAVDGVFEAITSALKGGDEVRLVGFGTFAVAS
 

KIL98380.1                          RAASEGRNPRTGEKIKIPASKQPKFKAGKGLKDGIQ-
gi|495892927|ref|WP_008617506.      RAASEGRNPRTGEKIKIPASKQPKFKAGKGLKDGIQ-
gi|83311888|ref|YP_422152.1|        RAASEGRNPRTGEKISIPASKQPKFKAGKGLKDGIQ-
 

is there an option to create output so each protein would be on just one line i.e. without line break?

 

alignment • 1.3k views
ADD COMMENTlink modified 5.1 years ago by Antonio R. Franco4.5k • written 5.1 years ago by prostoesh10
0
gravatar for Antonio R. Franco
5.1 years ago by
Spain. Universidad de Córdoba
Antonio R. Franco4.5k wrote:

There is one of the output file in Clustal, that can be imported as a clustal file (obvious, that is, do not use the open function) into a window program named GeneDoc that will allow you to do what you want and many more things

ADD COMMENTlink modified 12 months ago by _r_am31k • written 5.1 years ago by Antonio R. Franco4.5k

i kinda can't afford an extra step like one more program

i'll be creating a lot of alignments

ADD REPLYlink written 5.1 years ago by prostoesh10

It's your choice. I am experienced in importing the clustal results into GeneDoc, and I love it.

Give a try..

ADD REPLYlink written 5.1 years ago by Antonio R. Franco4.5k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1540 users visited in the last hour