Question: Determine identify of protein domains in a fusion protein
gravatar for elkington
5.0 years ago by
United States
elkington0 wrote:

I have a list of fusion proteins that contain domains similar to known enzymes; however, other portions of the fusion proteins are not similar to other known domains. I've used BLAST, HMMs, IPRscan, and NCBI Conserved Domain Search.

Does anyone have any ideas to try to find domains with some similarity to portions of the fusion proteins?

ADD COMMENTlink modified 4.9 years ago by Jean-Karim Heriche23k • written 5.0 years ago by elkington0
gravatar for Jean-Karim Heriche
4.9 years ago by
EMBL Heidelberg, Germany
Jean-Karim Heriche23k wrote:

Have you tried Pfam ? You can input a sequence and get matching Pfam domains. There is also a batch search mode.

ADD COMMENTlink written 4.9 years ago by Jean-Karim Heriche23k
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