Forum:Data Vizualization or Pathway Analysis
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6.8 years ago

Does anyone have any recommendations for an open source that allows for data visualization or pathway analysis; specific for transcriptome sequencing?

RNA-Seq next-gen Forum • 1.5k views
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6.8 years ago
vassialk ▴ 200

Cytoscape with plugins

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6.8 years ago
Chirag Parsania ★ 1.9k

There are many tools to do that. Very easy and most informative are various cytoscape plugins. I would recommend 2 plugins named Bingo and EnrichmentMap. You can also generate some nice images using kegg online tool. It will give you various pathway images as per your geneset.

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