Forum:Data Vizualization or Pathway Analysis
2
0
Entering edit mode
9.1 years ago

Does anyone have any recommendations for an open source that allows for data visualization or pathway analysis; specific for transcriptome sequencing?

next-gen RNA-Seq • 1.8k views
ADD COMMENT
0
Entering edit mode
9.1 years ago
Chirag Parsania ★ 2.0k

There are many tools to do that. Very easy and most informative are various cytoscape plugins. I would recommend 2 plugins named Bingo and EnrichmentMap. You can also generate some nice images using kegg online tool. It will give you various pathway images as per your geneset.

ADD COMMENT

Login before adding your answer.

Traffic: 1915 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6