Question: out put figure of a NGS tool
0
gravatar for kanwarjag
4.2 years ago by
kanwarjag1.0k
United States
kanwarjag1.0k wrote:

I am trying to understand a figure  generated by qualimap titled Coverage Profile Along in Genes http://kokonech.github.io/qualimap/kidney_rnaseqqc/qualimapReport.html .

What is plotted in X axis, I assumed Y axis is normalized read count when I looked at the detailed manual it says -The plot shows mean coverage profile of the transcripts, The X axis is not detailed and any one perhaps advice how they are calculating it.

 

Thanks

 


 

rna-seq • 989 views
ADD COMMENTlink modified 4.2 years ago by Devon Ryan93k • written 4.2 years ago by kanwarjag1.0k
1
gravatar for Devon Ryan
4.2 years ago by
Devon Ryan93k
Freiburg, Germany
Devon Ryan93k wrote:

Each gene is divided into 100 (equally sized) bins. The coverage in each bin is calculated and plotted.

ADD COMMENTlink written 4.2 years ago by Devon Ryan93k
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