Running PSI-BLAST Against Multiple Queries
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6.0 years ago
Xylanaser ▴ 80

Hi, I'm new in standalone blast+ and in linux terminal. I set the bash-profile to load the PATH and BLASTDB for my blast already, but I don't know how to use psi-blast yet. The question is - Can I and How (If yes) do the search against db with one query sequnce? But the file have >400 FASTA sequences. I need to checkout every sequence alone agaisnt database. Is it possible to run this job automatic in blast+?  (one run in loop for every seq?)

Pls help !

blast sequence psi-blast protein Protein-seq • 1.9k views
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