Question: Running PSI-BLAST Against Multiple Queries
0
gravatar for Xylanaser
3.4 years ago by
Xylanaser10
Poland - Warsaw - SGGW/WULS
Xylanaser10 wrote:

Hi, I'm new in standalone blast+ and in linux terminal. I set the bash-profile to load the PATH and BLASTDB for my blast already, but I don't know how to use psi-blast yet. The question is - Can I and How (If yes) do the search against db with one query sequnce? But the file have >400 FASTA sequences. I need to checkout every sequence alone agaisnt database. Is it possible to run this job automatic in blast+?  (one run in loop for every seq?)

Pls help !

ADD COMMENTlink modified 3.4 years ago by pld4.8k • written 3.4 years ago by Xylanaser10
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 787 users visited in the last hour