Running PSI-BLAST Against Multiple Queries
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6.9 years ago
Xylanaser ▴ 80

Hi, I'm new in standalone blast+ and in linux terminal. I set the bash-profile to load the PATH and BLASTDB for my blast already, but I don't know how to use psi-blast yet. The question is - Can I and How (If yes) do the search against db with one query sequence? But the file have >400 FASTA sequences. I need to checkout every sequence alone against database. Is it possible to run this job automatic in blast+? (one run in loop for every seq?)

Please help!

psi-blast sequence blast protein • 2.0k views

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