I know how to installed command line BLAST(2.2.31) previously, I installed and configured it on windows and unuix enviornment (both are working perfectly). But this time I have large amount of sequences for blast therefor I thought to do this through remote server PuTTY / SSH .
I tried to download and configured it as I did in unix. BUT it seems that there is something wrong.
I put it in a directory wher I want to install and then extracted it and configured it as follwing:
|$ export PATH="PATH:home/tb44227/nobackup/ncbi-blast-2.2.31+/bin"|
then I make the directory of db in ncbi-blast-2.2.31+ directory
then downloaded the databases from ncbi and swissprot.
tb44227@lidong2:~/nobackup/ncbi-blast-2.2.31+> -bash: blastn: command not found
Could you please guide what|s wrong with the installation and configuration process of blast+.
I am absolutely new in SSH and PUTTY. Applogy if I made some mistakes.