Bowtie query position
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5.4 years ago
ete ▴ 100

Hi,

is it possible to get not only the position of the reference strand but also of the query sequence? I know it is possible to "find" the sequence on the query but that's a not so nice solution...

ThanksĀ 

alignment • 900 views
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Can you rephrase the question ? Position of query sequence ?

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5.4 years ago

The query sequence is typically included in the SAM format, it's the 10th column.

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