Question: How to check whether a genome is circular
0
gravatar for utkarsh.sood
4.7 years ago by
utkarsh.sood30
India
utkarsh.sood30 wrote:

Hello 

I have a sequence generated by SMRT sequencing. It has only 1 contig. I want be sure that it is a complete genome and also check whether it is circular or not. How can I do so?

 

Thanks

ADD COMMENTlink modified 4.7 years ago by lexnederbragt1.2k • written 4.7 years ago by utkarsh.sood30
1

Take a look at this post and answer by lexnederbragt

ADD REPLYlink modified 8 months ago by RamRS28k • written 4.7 years ago by Biomonika (Noolean)3.1k

That information is a bit outdated by now. See my answer below.

ADD REPLYlink written 4.7 years ago by lexnederbragt1.2k
0
gravatar for lexnederbragt
4.7 years ago by
lexnederbragt1.2k
Oslo, Norway
lexnederbragt1.2k wrote:

Have a look here. Another tool that I tried and that seems to be working is Circlator, but I haven't tested it extensively.

ADD COMMENTlink modified 8 months ago by RamRS28k • written 4.7 years ago by lexnederbragt1.2k
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