How to check whether a genome is circular
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6.0 years ago
utkarsh.sood ▴ 40

Hello 

I have a sequence generated by SMRT sequencing. It has only 1 contig. I want be sure that it is a complete genome and also check whether it is circular or not. How can I do so?

 

Thanks

myposts sequencing genome blast Assembly • 4.8k views
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Take a look at this post and answer by lexnederbragt

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That information is a bit outdated by now. See my answer below.

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6.0 years ago
lexnederbragt ★ 1.3k

Have a look here. Another tool that I tried and that seems to be working is Circlator, but I haven't tested it extensively.

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