I have a sequence generated by SMRT sequencing. It has only 1 contig. I want be sure that it is a complete genome and also check whether it is circular or not. How can I do so?
Take a look at this post and answer by lexnederbragt
That information is a bit outdated by now. See my answer below.
Have a look here. Another tool that I tried and that seems to be working is Circlator, but I haven't tested it extensively.