Entering edit mode
8.4 years ago
aachueva
•
0
I have a VCF file that has several custom annotations(ABHet, blat score, etc) that I've added using bcf-annotate. I would like to re-run VQSR recalibration on this VCF file using those custom annotations. Is this possible or is recalibration allowed only using annotations generated by GATK e.g.: QD, DP, FS, SOR|MQRankSum, etc ?
