Question: not able to specify parfname with genscan for Ab initio prediction
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gravatar for chrisclarkson100
3.6 years ago by
European Union
chrisclarkson10080 wrote:

Trying to Ab initio annotate a sequence with "Genscan", having the following problems:

None of the manuals on genscan detail how to specify the "parfname". I know that I'm supposed to specify the file pathway but when I try the following code (specifying the directory/subdirectory/filename and then the name of the file in accordance with the "seqname"):

"genscan /home/practical/fungalgenome fungalgenome

reading sequence file fungalgenome...  12532 bp

Error : matrix file /home/practical/fungalgenome could not be opened"

It returns the following error. If it's something wrong with the file it's just a ".tfa" file that Istored in the "practical directory...

Any tips

software error gene • 864 views
ADD COMMENTlink written 3.6 years ago by chrisclarkson10080
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