Question: Methylation correlation between adjacent CpGs in certain genomic interval from BAM files
1
gravatar for Shicheng Guo
3.3 years ago by
Shicheng Guo7.4k
Shicheng Guo7.4k wrote:

Hi All,

I was asked to calculate the correlation (Pearson) of the methylation between the adjacent CpGs with the reads from the BAM files (BS-seq). Any script or software? 

 

Thanks. I have made the perl script. 

 

Thanks. 

Best regards, 

 

bs-seq methylation correlation • 1.0k views
ADD COMMENTlink modified 3.3 years ago • written 3.3 years ago by Shicheng Guo7.4k

If you have got an answer, would you mind sharing it with the community so that folks can learn from your experience?

ADD REPLYlink written 3.3 years ago by Sean Davis25k
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