Question: Shared Haplotye In Specific Region Based On Family Based Study
1
gravatar for Omid
7.9 years ago by
Omid560
Netherlands
Omid560 wrote:

I have done 300K SNP array by Illumina for 27 patients and found a common deletions in 9 of them. Now I would like to study shared haplotype in this specific region in these 9 patients. How do I do it in easier way? Which program is better and how can I do it? I tried shared haplotype by plink but it is base on case-control and I am working on family-based study.Thanks

haplotype snp • 1.3k views
ADD COMMENTlink modified 5.0 years ago by Biostar ♦♦ 20 • written 7.9 years ago by Omid560
0
gravatar for Zev.Kronenberg
7.9 years ago by
United States
Zev.Kronenberg11k wrote:

Have you tried GeneHunter or MapMaker3 from the Broad institute?

http://www.broadinstitute.org/scientific-community/software?criteria=Linkage%20Analysis

ADD COMMENTlink modified 5.2 years ago by Leonor Palmeira3.7k • written 7.9 years ago by Zev.Kronenberg11k
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