I am trying to use fastUniq to remove duplicated sequences. I am using the following command on linux platform:
~/FastUniq/source/fastuniq -i <seq1.fq> <seq2.fq> -tq -o fu_1.fq -p fu_2.fq -c 0
But I got an error. I tried also different versions of –t but did not work…
I found the manual a bit spartan, could you please give some tips on how to write the command?