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Comment: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
by
Elisabeth Gasteiger
★
2.3k
See also https://www.uniprot.org/help/negative_datasets
Comment: Sheep reference genome remapping coordinates
by
valentinatsar
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0
Thank you for your response
As I can understand this tool takes sequence input files right? I have genome-wide genotypes instead of sequen…
Comment: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
by
me
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750
Ok I made this into an answer. Could you please accept it as such.
Answer: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
by
me
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You can't. The data does not exist. UniProt only annotates where a lysine is know to be acetylated. There is no way that UniProt can know w…
Comment: How to compare the quality of assemblies
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Are there any short read datasets available in SRA? Can you try and see how many left over reads remain after you align to both of your ass…
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From NCBI: https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_001712695.1/
Use the `Download` button or `curl/datasets`.
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> But it keeps giving error
Please tell us what the error is.
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Looking at the information about the BAM file in the link included at the end of this sentence, it seems that the BAM file does not contain…
Comment: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
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Jacky
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I got it, thank you for your response.
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The DESeq2 input is a numeric count matrix (or data.frame) with rows being genes/observations and columns being samples/cells/specimen. Ple…
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Hi. Do you have any updates on what you ended up doing? I am encountering same issue, cannot really find a good TF motif database for zebra…
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Wonderful, and thanks for tagging Mike!
For those who come back for this problem, the following seemed to work for me:
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Comment: SLURM submission problem: Indexing the Reference Genome is not done in STAR
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You're allocating 4 compute nodes (`#SBATCH -N 4`), but STAR can't actually make use of more than 1 compute node. You can increase the num…
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```conda install -y bioconda::packageX conda-forge::packageY``` should do what you're looking for.
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