Question: Gene Gain/loss + Duplication Tree
0
gravatar for moranr
3.1 years ago by
moranr250
Ireland
moranr250 wrote:

Hi, 

Is there a tool to carry out gene gain loss + duplication analysis with the HOGs , like this :http://imgur.com/XuIGhnj (from the paper). 

If not, can you give an indication to how you created this image ?  

Thanks, 
R

 

 

 

oma orthologs • 1.6k views
ADD COMMENTlink modified 3.1 years ago by adrian.altenhoff440 • written 3.1 years ago by moranr250
2
gravatar for adrian.altenhoff
3.1 years ago by
Switzerland
adrian.altenhoff440 wrote:

Hi moranr,

the analysis to collect the data for these figures has been done using family-analyzer https://github.com/DessimozLab/familyanalyzer. It's a tool to mind orthoxml files in general in terms of the gene gains- and lost events. As input it requires an orthoxml file defining HOGs, e.g. the output from OmaStandalone http://omabrowser.org/standalone.

Best

Adrian

 

ADD COMMENTlink written 3.1 years ago by adrian.altenhoff440

Fantastic, Thank you. 

ADD REPLYlink written 3.1 years ago by moranr250
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