The title says it all: What is the difference between RS_HGAP_Assembly.2 and RS_HGAP_Assembly.3 in SMRT analysis 2.3.0?
I know that RS_HGAP_Assembly.3 is FASTER and RS_HGAP_Assembly.2 is supposed to have higher quality. But what where is the difference?
And what about the settings? So far we used RS_HGAP_Assembly.3. Can we use the same settings for RS_HGAP_Assembly.2 (for the settings which exist in both protocolls)?
Did you use both so far? Did you see big differences? If yes, what kind of differences?