I would like to get the latest beagle files from vcf files from phase 3 of the 1000 genomes data with 2504 unrelated individuals that is here:
http://bochet.gcc.biostat.washington.edu/beagle/1000_Genomes_phase3_v5a/, which uses these 1000 Genomes vcf files: ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/
In particular I am trying to get something like what was available for the previous releases to create the files:
Would I need to use the script here with the BEAGLE utilities?
Thank you so much for any advice about how to get these files in beagle, very very much appreciated...