I just created my first MALDI imaging data (imzML) :)
It made me very happy to see that there are many tools available but having no previous experience with this type of data I am not sure what software is best for which purpose/my data. Looks like some of them can only do the visualization part, but I would also like to do preprocessing and (basic) statistics. Moreover, I would prefer Open Source tools if possible, but what I have found so far is not all Open Source:
- Cardinal (command line)
- Msi.R (command line)
- msIQuant (when new version is launched imzML compatible)
Does anyone have any experiences with some of the tools or any recommendations?
Thanks for your help,