Best tool to create a graphical (QC) summary report based on a VCF file?
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6.8 years ago
William ★ 5.1k

What are currently some good tools to create a graphical quality control summary report (html or preferably PDF) on top of a VCF file?

I am looking for something like what Qualimap is for BAM files, but then for VCF files.

BCFTools plot-vcfstats can create PDF QC reports but doesn't have all the plots that I am looking for. Are there some other good VCF QC tools that provide html or PDF reports statistics and plots?

vcf qc • 2.5k views

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