Best tool to create a graphical (QC) summary report based on a VCF file?
0
0
Entering edit mode
6.8 years ago
William ★ 5.1k

What are currently some good tools to create a graphical quality control summary report (html or preferably PDF) on top of a VCF file?

I am looking for something like what Qualimap is for BAM files, but then for VCF files.

BCFTools plot-vcfstats can create PDF QC reports but doesn't have all the plots that I am looking for. Are there some other good VCF QC tools that provide html or PDF reports statistics and plots?

vcf qc • 2.5k views
ADD COMMENT

Login before adding your answer.

Traffic: 1335 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6