Question: Error installing Velvet assembler on Mac OS X
gravatar for iferroci
4.7 years ago by
European Union
iferroci0 wrote:

Hi there,

i'm try to install on my MacOSX 10.10.5 Velvet assembler.

I downloaded the folder unzipped then when i run make it say all this errors:

1 warning generated.

gcc -Wall -m64 -O3  -o velveth obj/tightString.o obj/run.o obj/recycleBin.o obj/splay.o obj/splayTable.o obj/readSet.o obj/binarySequences.o obj/utility.o obj/kmer.o obj/kmerOccurenceTable.o obj/autoOpen.o -lz -lm

gcc -Wall -m64 -O3  -o velvetg obj/tightString.o obj/graph.o obj/run2.o obj/fibHeap.o obj/fib.o obj/concatenatedGraph.o obj/passageMarker.o obj/graphStats.o obj/correctedGraph.o obj/dfib.o obj/dfibHeap.o obj/recycleBin.o obj/readSet.o obj/binarySequences.o obj/shortReadPairs.o obj/scaffold.o obj/locallyCorrectedGraph.o obj/graphReConstruction.o obj/roadMap.o obj/preGraph.o obj/preGraphConstruction.o obj/concatenatedPreGraph.o obj/readCoherentGraph.o obj/utility.o obj/kmer.o obj/kmerOccurenceTable.o obj/allocArray.o obj/autoOpen.o -lz -lm

Some suggestion on how to fix it??




velvet forum assembly • 1.8k views
ADD COMMENTlink modified 4.6 years ago by Biostar ♦♦ 20 • written 4.7 years ago by iferroci0
gravatar for Michael Dondrup
4.7 years ago by
Bergen, Norway
Michael Dondrup47k wrote:

There's no error here, just the compiler calls make generates, so nothing to fix. To have some warnings when compiling -Wall (with all warnings turned on) is quite normal. after running make, run `make test` or `make check` to run tests of the binaries.

ADD COMMENTlink modified 4.7 years ago • written 4.7 years ago by Michael Dondrup47k
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