Question: Extracting Exon intron utr co-ordinate
gravatar for rakeshmbb
4.6 years ago by
rakeshmbb0 wrote:

Dear all,

Please kindly help me. I have a list of genes in a simple text file. I have whole genome annotation file (.gff3). Now I want to retrieve genomic co-ordinate of the UTR, Exon, intron of genes of my interest only. How can I do this.

gene genome • 1.4k views
ADD COMMENTlink written 4.6 years ago by rakeshmbb0

What language are you comfortable using? Python and R, for example, both have nice facilities for working with gff files.

ADD REPLYlink modified 7 months ago by RamRS27k • written 4.6 years ago by Sean Davis26k
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