Question: Diff Gene Expression On Multiple Biological Conditions : Deseq
gravatar for Abhi
8.3 years ago by
United States
Abhi1.5k wrote:

Hey Guys

I am wondering if I can use DESeq for comparing genes expression across multiple biological conditions (I have 4 of them ) and not just 2. Based on what I have read from the vignette it seems like the package expects two condtions (eg treated v/s control) I guess one way to do it is to do pairwise comparison but just wondering if I can take your opinion.

Thanks! -Abhi

gene rna deseq • 2.8k views
ADD COMMENTlink written 8.3 years ago by Abhi1.5k
gravatar for Gireesh K. Bogu
8.3 years ago by
Gireesh K. Bogu100 wrote:

You can use DEB web-interface to run DESeq along with several other RNA-Seq software. You can access this at This works well, if you have multiple conditions but not single. It accepts read-counts format. You can get this by using BED tools.

Good luck

ADD COMMENTlink written 8.3 years ago by Gireesh K. Bogu100

Is there any offline tool for the same? I have a similar situation.

ADD REPLYlink written 2.3 years ago by me.sr15100
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