Question: unprocessed/raw RNASeq database for normal samples of particular human tissue
0
gravatar for Ice P
4.5 years ago by
Ice P0
United States
Ice P0 wrote:

Is anyone aware of a source to obtain raw RNASeq (fastq or bam) data for NORMAL human OVARY samples (preferably Illumina)? I tried various sources including GEO, TCGA, GTEx etc, but no success yet. These sources have normal samples for many other normal tissues but ovary.

database dataset rnaseq • 1.4k views
ADD COMMENTlink modified 4.3 years ago by Alastair Kerr5.2k • written 4.5 years ago by Ice P0
1

Maybe try this RNA-Seq Atlas!

ADD REPLYlink written 4.3 years ago by Sukhdeep Singh10k
1
gravatar for Alastair Kerr
4.3 years ago by
Alastair Kerr5.2k
Manchester/UK/Cancer Biomarker Centre at CRUK-MI
Alastair Kerr5.2k wrote:

Here is a bam file for RNASeq in ovary from the ensembl ftp site

ftp://ftp.ensembl.org/pub/release-83/bamcov/homo_sapiens/genebuild/GRCh38.illumina.ovary.1.bam

I have remapped different tissue specific sequences from other BAM files from this site before and it should be what you are looking for.

ADD COMMENTlink modified 4 months ago by RamRS27k • written 4.3 years ago by Alastair Kerr5.2k
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