Plotting RPKMS per chromosome

Question

[Ron]

Hi,

I have plotted RPKM values per chromosome in R (scatter plot of positions),however I want to plot chromosomes in the cytogenetic context such as given here: http://www.ncbi.nlm.nih.gov/genome/tools/gdp/

I want to look at a specific chromosome and plot it while looking at the distribution of RPKMS of all genes in a chromosome.Any suggestions?

Thanks in advance,
Ron

Answer 1

[mkulecka]

I think Gviz is ideal for this.