How does GATK caculate the HaplotypeScore in Unified Genotyper
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5.4 years ago
naruto1nrt ▴ 30

I have a snp with HaplotypeScore=14 which must be filtered by hard filter(HaplotypeScore>13).But I am sure about this snp is true.

So do anybody know how does GATK caculate the HaplotypeScore in Unified Genotyper?

thanks

SNP software error next-gen GATK Unified Genotyper • 1.4k views
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