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• How miRNA sequencing works by Illumina GA ?
  Hi all, I'm using TCGA data set to analysis the expression of miRNA in cancers. They used Illumi...
• reference genome for miRNA sequencing
  sorry, for differential expression of miRNAs in an organism with tophat should I use the same f...
• Reference sequence for miRNA-Seq differential expression analysis
  Hi I am doing a differential expression analysis on miRSeq data. Since the reference miRNA seque...
• miRNAs interaction networks analysis
  Hello all , what is the best approach for miRNA and predicted target gene (without expression dat...
• How To Deal With Multiple Hits When Performing Mirna Expression Analysis
  Hi all, ive encountered a problem while working on miRNA expression analysis from an illumina run...
• Pipeline for small RNA-seq data analysis of non-model organism
  Hi. How to do an analysis of a set of small RNA-seq data (Illumina) without a reference genome fo...
• How to combine differentially expressed miRNAs to calculate molecular signature score in edgeR?
  I have 15 DE miRNAs between groups A and B. Is there a way to combine let's say DE of 5 miRNAs of...
• miRNA TCGA expression
  Hello, UALCAN ( ualcan.path.uab.edu/index.html) is a good tool to analysis the expression of t...
• Several questions about miRDeep2
  Hi all, I am currently using miRDeep2 to identify miRNAs in a non-model organism (a butterfly). A...
• miRNA analysis pipe line
  Hi, I have sequenced 3 males and 3 females fish gonad miRNA using Illumina Hiseq. Is there any s...
• Expression Counts from Bam Files of miRNA-seq data
  Hello, I am new to bioinformatics. I have been given bam files (aligned to a reference genome) o...
• Mirna Differential Expression
  Hello, I have miRNA short read data for few samples. I want to do differential analysis to find ...
• ROC for biomarker discovery
  Hi I have done classification analysis by ROC for finding novel miRNA biomarker, **Can I use me...
• Differential expression of microarray data in R
  Hey I need to do Differential expression analysis of microarry data I am stuck at one point. Wha...
• TCGA miRNA analysis workflow
  Hey all, I hope you are safe and well. I am trying to investigate the role of miRNA within the...
• Question about miRNA nomenclature
  Im working on some analysis with miRNA expression data and miRNA targets information from differe...
• Difference between CPM and RPM for RNA-seq reada quantification
  Hello everyone, I have a dataset of differentially expressed miRNAs. I aligned my microRNA reads...
• any tool or R package for integrated analysis of miRNA and mRNA expression data ??
  Hello guys, I need any tool or packages for  for integrated analysis of miRNA and mRNA expressio...
• Why not investigate non-DE miRNAs ?
  Hi, as most of the RNA sequencing analysis is focused on identifying DE miRNA expressed between c...