Question: (Closed) What is a full list of the modern robust enough software and tools which are designed to process .vcf format files?
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gravatar for vassialk
4.8 years ago by
vassialk190
Belarus
vassialk190 wrote:

What is a full list of the modern robust enough software and tools which are designed to process .vcf format files? Know VCF, GATK tools, VCFMiner, NextGene, Ugene, GenPro, DNAStar, CLC WB.

sequencing wg sequence vcf • 1.3k views
ADD COMMENTlink modified 4.8 years ago by Pierre Lindenbaum130k • written 4.8 years ago by vassialk190

Hello vassialk!

We believe that this post does not fit the main topic of this site.

Closing your post until you explain yourself on your barrage of vague questions.

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink written 4.8 years ago by RamRS30k

no time to talk

ADD REPLYlink written 4.8 years ago by vassialk190
4

I'm sorry, what?

ADD REPLYlink written 4.8 years ago by RamRS30k
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hilarious... :)

ADD REPLYlink written 4.8 years ago by David Langenberger9.5k
1

Btw, how would this look if it turned out that one or some of the companies behind "NextGene, ..." abuse this site for guerrilla marketing by using a fake account? And possibly not the kind publicity they might have intended? Not a convincing argument for buying into a closed source software that costs several 1k$ for non-perpetual licenses (making you effectively loose access to your data if fees are not payed?), for something you can otherwise get as free open source with a published and citable algorithm?

ADD REPLYlink modified 9 months ago by RamRS30k • written 4.8 years ago by Michael Dondrup47k

That's what I was thinking of when I posted this: C: Aborted session in R using featureCounts in Rsubread

I don't think such guerrilla folks can get past all the mods here.

ADD REPLYlink modified 9 months ago • written 4.8 years ago by RamRS30k

but you have time to ask ?

ADD REPLYlink written 4.8 years ago by Pierre Lindenbaum130k

Softgenetics doesn't pay him for talking ;)

ADD REPLYlink written 4.8 years ago by Michael Dondrup47k
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gravatar for Pierre Lindenbaum
4.8 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum130k wrote:

Using seqanswer and semanticmediawiki:

[[output_format::VCF]] [[Category:Bioinformatics application]] [[maintained::Yes]]

Here is a link with the query.

ADD COMMENTlink modified 9 months ago by RamRS30k • written 4.8 years ago by Pierre Lindenbaum130k

oppss, I used 'input' instead of 'output' but I'm sure you'll be able to fix this :-)

ADD REPLYlink written 4.8 years ago by Pierre Lindenbaum130k
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