Question: Is it possible to include BBMap in Bcbio-nextgen pipeline?
4.8 years ago by
Brad Chapman ♦ 9.5k
Brad Chapman ♦ 9.5k wrote:
It's possible to include it, but it would need integration work to include it as a new aligner. Documentation on writing that code is here:
Out of curiousity, why do you prefer BBMap over other integrated aligners in bcbio like bwa mem?
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