Question: (Closed) How to run BBMap in a Lubux shell for loop?
0
gravatar for elvissober
4.9 years ago by
elvissober20
South Africa
elvissober20 wrote:

for i in ls (*.fastaq)                  #  mapping fastq files to a preset reference
do
         ./bbmap.sh $i                 
done  

How to pass arguments after .sh call, what to write?

bash shell bbmap sequencing • 907 views
ADD COMMENTlink written 4.9 years ago by elvissober20

Hello elvissober!

We believe that this post does not fit the main topic of this site.

Please look up bash loops. Do not open multiple questions addressing the same question.

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink written 4.9 years ago by RamRS30k
Please log in to add an answer.
The thread is closed. No new answers may be added.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1441 users visited in the last hour