I am trying to plot the position of SNP with respect to the codon position, to see, if there is an enrichment in 3rd position of the codon or 1st position. It is easy to do, but I did not find the genomic coordinates of codon (in 3 nt intervals). I only find the CDS coordinates from UCSC. Is there available information of codon coordinates that can be downloaded.
I'm interested in the exact same thing. Do you guys know how could this be transferrable to R?
Thanks in advance, R
What have you tried?