I am analyzing RNA-Seq data having 22 samples from 3 batches for differential expression of genes. My condition is test between defective and normal phenotype. For one of the samples, the condition is indeterminate. From the slides, it appears to be slightly defective but might not necessarily be so. Is there anyway I can determine what to label it as? Would it help to see changes in logFC values when i first label it as defective and then as normal?